Ayasdi

Ayasdi

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Publications

TOPOLOGY AND DATA
by GUNNAR CARLSSON

Innate and adaptive T cells in asthmatic patients: Relationship to severity and disease mechanisms
Timothy S. C. Hinks, MD,a,b Xiaoying Zhou, PhD,a Karl J. Staples, PhD,a Borislav D. Dimitrov, MD,b,c
Alexander Manta, PhD,d Tanya Petrossian, PhD,e Pek Y. Lum, PhD,e Caroline G. Smith, RN,c Jon A. Ward, BSc,a,b
Peter H. Howarth, MD,a,b Andrew F. Walls, PhD,a Stephan D. Gadola, MD,a,f and Ratko Djukanovic, MDa,b Southampton, United Kingdom, Geretsried, Germany, Palo Alto, Calif, and Basel, Switzerland

Using Topological Data Analysis for diagnosis pulmonary embolism
Matteo Rucco∗1 , Lorenzo Falsetti2 , Damir Herman3 , Tanya Petrossian3 , Emanuela Merelli1 , Cinzia Nitti2, Aldo Salvi2
1University of Camerino, School of Science and Technology, Computer Science Division, Camerino, IT 2Internal and Subintensive Medicine of Ospedali Riuniti – Ancona, IT
3Ayasdi, Inc. Palo Alto, CA

Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing
Jason M. Knight1,3, Laurie A. Davidson2,3, Damir Herman6*, Camilia R. Martin7, Jennifer S. Goldsby2,3, Ivan V. Ivanov5, Sharon M. Donovan8 & Robert S. Chapkin2,3,4
1Department of Electrical Engineering, Texas A&M University, College Station, TX, 2Department of Nutrition & Food Science, Texas A&M University, College Station, TX, 3Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, 4Department of Veterinary Integrated Biosciences, Texas A&M University, College Station, TX, 5Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX, 6Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR, 7Department of Neonatology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 8Department of Food Science & Human Nutrition, University of Illinois, Urbana, IL.

Conserved abundance and topological features in chromatin-remodeling protein interaction networks
Mihaela E Sardiu1,†, Joshua M Gilmore1,†, Brad D Groppe1,†, Damir Herman2, Sreenivasa R Ramisetty3, Yong Cai4, Jingji Jin4, Ronald C Conaway1,5, Joan W Conaway1,5, Laurence Florens1 &
Michael P Washburn1,6,*

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
Scott Schwartz1,2, Iddo Friedberg3,9, Ivan V Ivanov4,5, Laurie A Davidson1,4, Jennifer S Goldsby4, David B Dahl2, Damir Herman6, Mei Wang7, Sharon M Donovan7 and Robert S Chapkin1,3,8*

An eQTL biological data visualisation challenge and approaches from the visualisation community
Christopher W Bartlett1*, Soo Yeon Cheong1, Liping Hou1, Jesse Paquette2, Pek Yee Lum2, Günter Jäger3, Florian Battke3, Corinna Vehlow4, Julian Heinrich4, Kay Nieselt3, Ryo Sakai5, Jan Aerts5, William C Ray1,6

Topological analysis of population activity in visual cortex
Gurjeet Singh, Facundo Memoli, Tigran Ishkhanov , Guillermo Sapiro, Gunnar Carlsson, Dario L. Ringach

Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and
excellent survival

Monica Nicolaua, Arnold J. Levineb,1, and Gunnar Carlssona,c
aDepartment of Mathematics, Stanford University, Stanford, CA 94305; bSchool of Natural Sciences, Institute for Advanced Study, Princeton, NJ 08540; and cAyasdi, Inc., Palo Alto, CA 94301

Topological Data Analysis of Escherichia coli O157:H7 and Non-O157 Survival in Soils
ABASIOFIOK MARK IBEKWE, Jincai Ma, David E Crowley, Ching-Hong Yang, Alexis M. Johnson, Tanya C. Petrossian4 and Pek Y. Lum

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